Horticulture Research

Volume 4, 2017

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Article|27 Dec 2017|OPEN

Combination of iTRAQ proteomics and RNA-seq transcriptomics reveals multiple levels of regulation in phytoplasma-infected Ziziphus jujuba Mill

Xia Ye, Huiyu Wang, Peng Chen, Bing Fu, Mengyang Zhang, Jidong Li, Xianbo Zheng, Bin Tan & Jiancan Feng
Article|27 Dec 2017|OPEN

Divergent evolutionary patterns of the MAPK cascade genes in Brassica rapa and plant phylogenetics

Peng Wu, Wenli Wang, Ying Li & Xilin Hou
Article|13 Dec 2017|OPEN

Characteristics of dihydroflavonol 4-reductase gene promoters from different leaf colored Malus crabapple cultivars

Ji Tian, Meng-chen Chen, Jie Zhang, Ke-ting Li, Ting-ting Song, Yun-cong Yao & Xi Zhang
Article|13 Dec 2017|OPEN

Endogenous auxin and its manipulation influence in vitro shoot organogenesis of citrus epicotyl explants

Wei Hu, Xiaomin Wang, Sabrina Fagundez, Lorenzo Katin-Grazzi, Yanjun Li, Wei Li, Yingnan Chen, Shenxi Xie, Richard J McAvoy, Yi Li & Ziniu Deng
Article|06 Dec 2017|OPEN

Characterization of physiological and molecular processes associated with potato response to Zebra chip disease

Chika C Nwugo, Venkatesan G Sengoda, Li Tian & Hong Lin
Article|29 Nov 2017|OPEN

Reprogramming of a defense signaling pathway in rough lemon and sweet orange is a critical element of the early response to ‘Candidatus Liberibacter asiaticus’

Qibin Yu, Chunxian Chen, Jiqiang Yao, Dongliang Du, Ming Huang, Fahong Yu, Ronald H Brlansky & Frederick G. Gmitter Jr
Article|15 Nov 2017|OPEN

Genome resequencing and transcriptome profiling reveal structural diversity and expression patterns of constitutive disease resistance genes in Huanglongbing-tolerant Poncirus trifoliata and its hybrids

Nidhi Rawat, Brajendra Kumar, Ute Albrecht, Dongliang Du, Ming Huang, Qibin Yu, Yi Zhang, Yong-Ping Duan, Kim D Bowman, Fred G Gmitter Jr & Zhanao Deng
Article|15 Nov 2017|OPEN

Genome resequencing and transcriptome profiling reveal structural diversity and expression patterns of constitutive disease resistance genes in Huanglongbing-tolerant Poncirus trifoliata and its hybrids

Nidhi Rawat, Brajendra Kumar, Ute Albrecht, Dongliang Du, Ming Huang, Qibin Yu, Yi Zhang, Yong-Ping Duan, Kim D Bowman, Fred G Gmitter Jr & Zhanao Deng
Article|08 Nov 2017|OPEN

Clarifying sub-genomic positions of QTLs for flowering habit and fruit quality in U.S. strawberry (Fragaria×ananassa) breeding populations using pedigree-based QTL analysis

Sujeet Verma, Jason D Zurn, Natalia Salinas, Megan M Mathey, Beatrice Denoyes, James F Hancock, Chad E Finn, Nahla V Bassil & Vance M Whitaker
Corrigendum|25 Oct 2017|OPEN

Pro-inflammatory effects of a litchi protein extract in murine RAW264.7 macrophages

Xiaorong Hu, Huiqing Yan, Zhaocheng Ma, Xiuxin Deng & Xiaoli Wang
Article|18 Oct 2017|OPEN

VqMAPKKK38 is essential for stilbene accumulation in grapevine

Yuntong Jiao, Dan Wang, Lan Wang, Changyue Jiang & Yuejin Wang
Article|08 Oct 2017|OPEN

Clarifying sub-genomic positions of QTLs for flowering habit and fruit quality in U.S. strawberry (Fragaria×ananassa) breeding populations using pedigree-based QTL analysis

Sujeet Verma, Jason D Zurn, Natalia Salinas, Megan M Mathey, Beatrice Denoyes, James F Hancock, Chad E Finn, Nahla V Bassil & Vance M Whitaker
Review Article|04 Oct 2017|OPEN

Water lilies as emerging models for Darwin’s abominable mystery

Fei Chen, Xing Liu, Cuiwei Yu, Yuchu Chen, Haibao Tang & Liangsheng Zhang
Corrigendum|04 Oct 2017|OPEN

The bZIP transcription factor MdHY5 regulates anthocyanin accumulation and nitrate assimilation in apple

Ji-Fang Yao, Feng-Jia Qu, Xiao-Na Wang, Chun-Xiang You, Xiao-Fei Wang, Yu-Jin Hao & Jian-Ping An
Article|04 Oct 2017|OPEN

Interval mapping for red/green skin color in Asian pears using a modified QTL-seq method

Huabai Xue, Ting Shi, Fangfang Wang, Huangkai Zhou, Jian Yang, Long Wang, Suke Wang, Yanli Su, Zhen Zhang, Yushan Qiao & Xiugen Li
Article|27 Sep 2017|OPEN

Solar thermotherapy reduces the titer of Candidatus Liberibacter asiaticus and enhances canopy growth by altering gene expression profiles in HLB-affected citrus plants

Melissa M Doud, Yungsheng Wang, Michelle T Hoffman, Christina L Latza, Weiqi Luo, Cheryl M Armstrong, Tim R Gottwald, Liangying Dai, Feng Luo & Yongping Duan
Article|20 Sep 2017|OPEN

Exogenous cytokinin application to Actinidia chinensis var. deliciosa ‘Hayward’ fruit promotes fruit expansion through water uptake

Simona Nardozza, Helen L Boldingh, Mark W Wohlers, Andrew P Gleave, Zhiwei Luo, Guglielmo Costa, Elspeth A MacRae, Michael J Clearwater & Annette C Richardson
Article|13 Sep 2017|OPEN

Comparative transcriptome analysis during early fruit development between three seedy citrus genotypes and their seedless mutants

Shujian Zhang, Qingchun Shi, Ute Albrecht, Robert G Shatters Jr, Ric Stange, Greg McCollum, Shuo Zhang, Chengming Fan & Ed Stover
Article|13 Sep 2017|OPEN

Phospholipase D inhibition by hexanal is associated with calcium signal transduction events in raspberry

Walid El Kayal, Gopinadhan Paliyath, J Alan Sullivan & Jayasankar Subramanian
Article|23 Aug 2017|OPEN

Molecular mechanisms behind the accumulation of ATP and H2O2 in citrus plants in response to ‘Candidatus Liberibacter asiaticus’ infection

Marco Pitino, Cheryl M Armstrong & Yongping Duan
Corrigendum|10 Aug 2017|OPEN

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Article|09 Aug 2017|OPEN

The WRKY transcription factor HpWRKY44 regulates CytP450-like1 expression in red pitaya fruit (Hylocereus polyrhizus)

Mei-nv Cheng, Zi-juan Huang, Qing-zhu Hua, Wei Shan, Jian-fei Kuang, Wang-jin Lu, Yong-hua Qin & Jian-ye Chen
Article|02 Aug 2017|OPEN

Pathogen development and host responses to Plasmopara viticola in resistant and susceptible grapevines: an ultrastructural study

Xiao Yin, Rui-Qi Liu, Hang Su, Li Su, Yu-Rui Guo, Zi-Jia Wang, Wei Du, Mei-Jie Li, Xi Zhang, Yue-Jin Wang, Guo-Tian Liu & Yan Xu
Article|02 Aug 2017|OPEN

Patterns of genomic and phenomic diversity in wine and table grapes

Zoë Migicovsky, Jason Sawler, Kyle M Gardner, Mallikarjuna K Aradhya, Bernard H Prins, Heidi R Schwaninger, Carlos D Bustamante, Edward S Buckler, Gan-Yuan Zhong, Patrick J Brown & Sean Myles
Article|26 Jul 2017|OPEN

Applying generalized additive models to unravel dynamic changes in anthocyanin biosynthesis in methyl jasmonate elicited grapevine (Vitis vinifera cv. Gamay) cell cultures

Nay Min Min Thaw Saw, Claudio Moser, Stefan Martens & Pietro Franceschi
Article|12 Jul 2017|OPEN

A transcriptome analysis of two grapevine populations segregating for tendril phyllotaxy

Jie Arro, Jose Cuenca, Yingzhen Yang, Zhenchang Liang, Peter Cousins & Gan-Yuan Zhong
Review Article|05 Jul 2017|OPEN

New technologies accelerate the exploration of non-coding RNAs in horticultural plants

Degao Liu, Ritesh Mewalal, Rongbin Hu, Gerald A Tuskan & Xiaohan Yang
Article|14 Jun 2017|OPEN

The genetic architecture of growth traits in Salix matsudana under salt stress

Jian Zhang, Huwei Yuan, Qingshan Yang, Min Li, Ying Wang, Yujuan Li, Xiangjian Ma, Feng Tan & Rongling Wu
Article|14 Jun 2017|OPEN

An eFP browser for visualizing strawberry fruit and flower transcriptomes

Charles Hawkins, Julie Caruana, Jiaming Li, Chris Zawora, Omar Darwish, Jun Wu, Nadim Alkharouf & Zhongchi Liu
Article|07 Jun 2017|OPEN

The bZIP transcription factor MdHY5 regulates anthocyanin accumulation and nitrate assimilation in apple

Jian-Ping An, Feng-Jia Qu, Ji-Fang Yao, Xiao-Na Wang, Chun-Xiang You, Xiao-Fei Wang & Yu-Jin Hao
Article|24 May 2017|OPEN

Additive QTLs on three chromosomes control flowering time in woodland strawberry (Fragaria vesca L.)

Samia Samad, Takeshi Kurokura, Elli Koskela, Tuomas Toivainen, Vipul Patel, Katriina Mouhu, Daniel James Sargent & Timo Hytönen
Article|24 May 2017|OPEN

Transcriptomic and metabolomic analyses of cucumber fruit peels reveal a developmental increase in terpenoid glycosides associated with age-related resistance to Phytophthora capsici

Ben N Mansfeld, Marivi Colle, Yunyan Kang, A Daniel Jones & Rebecca Grumet
Article|10 May 2017|OPEN

Enzyme activities and gene expression of starch metabolism provide insights into grape berry development

Xudong Zhu, Chaobo Zhang, Weimin Wu, Xiaopeng Li, Chuan Zhang & Jinggui Fang
Article|26 Apr 2017|OPEN

A community resource for exploring and utilizing genetic diversity in the USDA pea single plant plus collection

William L. Holdsworth, Elodie Gazave, Peng Cheng, James R. Myers, Michael A. Gore, Clarice J. Coyne, Rebecca J. McGee & Michael Mazourek
Article|12 Apr 2017|OPEN

Genotyping-by-sequencing of pear (Pyrus spp.) accessions unravels novel patterns of genetic diversity and selection footprints

Satish Kumar, Chris Kirk, Cecilia Deng, Claudia Wiedow, Mareike Knaebel & Lester Brewer
Article|05 Apr 2017|OPEN

Apple dwarfing rootstocks exhibit an imbalance in carbohydrate allocation and reduced cell growth and metabolism

Toshi M Foster, Peter A McAtee, Chethi N Waite, Helen L Boldingh & Tony K McGhie
Article|22 Mar 2017|OPEN

Combination of Cyclamen persicum Mill. floral gene promoters and chimeric repressors for the modification of ornamental traits in Torenia fournieri Lind.

Ichiro Kasajima, Norihiro Ohtsubo & Katsutomo Sasaki
Review Article|15 Mar 2017|OPEN

DNA-informed breeding of rosaceous crops: promises, progress and prospects

Cameron P Peace
Article|08 Mar 2017|OPEN

Differential gene expression analysis of ‘Chili’ (Pyrus bretschneideri) fruit pericarp with two types of bagging treatments

Yuling Wang, Xinfu Zhang, Ran Wang, Yingxin Bai, Chenglian Liu, Yongbing Yuan, Yingjie Yang & Shaolan Yang
Article|22 Feb 2017|OPEN

Elucidation of the ‘Honeycrisp’ pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus×domestica) pedigree-connected SNP data set

Nicholas P Howard, Eric van de Weg, David S Bedford, Cameron P Peace, Stijn Vanderzande, Matthew D Clark, Soon Li Teh, Lichun Cai & James J Luby
Article|22 Feb 2017|OPEN

Selection for production-related traits in Pelargonium zonale: improved design and analysis make all the difference

Heike Molenaar, Martin Glawe, Robert Boehm & Hans-Peter Piepho
Article|15 Feb 2017|OPEN

CmFTL2 is involved in the photoperiod- and sucrose-mediated control of flowering time in chrysanthemum

Jing Sun, Heng Wang, Liping Ren, Sumei Chen, Fadi Chen & Jiafu Jiang
Article|27 Jul 2016|OPEN

A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding

Amanda M Hulse-Kemp, Hamid Ashrafi, Joerg Plieske, Jana Lemm, Kevin Stoffel, Theresa Hill, Hartmut Luerssen, Charit L Pethiyagoda, Cindy T Lawley, Martin W Ganal & Allen Van Deynze
Article|16 Mar 2016|OPEN

The different interactions of Colletotrichum gloeosporioides with two strawberry varieties and the involvement of salicylic acid

Qing-Yu Zhang, Li-Qing Zhang, Li-Li Song, Ke Duan, Na Li, Yan-Xiu Wang & Qing-Hua Gao