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Review Article|15 Mar 2020|OPEN
Perspectives of CRISPR/Cas-mediated cis-engineering in horticulture: unlocking the neglected potential for crop improvement
Qiang Li1,2 and Manoj Sapkota3 , Esther van der Knaap,2,3,4 ,
1College of Horticultural Science and Engineering, Shandong Agricultural University, Tai’an, China
2Center for Applied Genetic Technologies, University of Georgia, Athens, GA, USA
3Institute for Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA
4Department of Horticulture, University of Georgia, Athens, GA, USA
*Corresponding author. E-mail: vanderkn@uga.edu

Horticulture Research 7,
Article number: 36 (2020)
doi: https://doi.org/10.1038/s41438-020-0258-8
Views: 249

Received: 13 Nov 2019
Revised: 09 Jan 2020
Accepted: 11 Feb 2020
Published online: 15 Mar 2020

Abstract

Directed breeding of horticultural crops is essential for increasing yield, nutritional content, and consumer-valued characteristics such as shape and color of the produce. However, limited genetic diversity restricts the amount of crop improvement that can be achieved through conventional breeding approaches. Natural genetic changes in cis-regulatory regions of genes play important roles in shaping phenotypic diversity by altering their expression. Utilization of CRISPR/Cas editing in crop species can accelerate crop improvement through the introduction of genetic variation in a targeted manner. The advent of CRISPR/Cas-mediated cis-regulatory region engineering (cis-engineering) provides a more refined method for modulating gene expression and creating phenotypic diversity to benefit crop improvement. Here, we focus on the current applications of CRISPR/Cas-mediated cis-engineering in horticultural crops. We describe strategies and limitations for its use in crop improvement, including de novo cis-regulatory element (CRE) discovery, precise genome editing, and transgene-free genome editing. In addition, we discuss the challenges and prospects regarding current technologies and achievements. CRISPR/Cas-mediated cis-engineering is a critical tool for generating horticultural crops that are better able to adapt to climate change and providing food for an increasing world population.