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Article|05 Oct 2016|OPEN
Spatial and compositional variation in the fungal communities of organic and conventionally grown apple fruit at the consumer point-of-purchase
Ahmed Abdelfattah1 , Michael Wisniewski2 , , Samir Droby3 and Leonardo Schena,1 ,
1Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89124 Reggio, Calabria, Italy
2U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS), 2217 Wiltshire Road, Kearneysville, WV 25430, USA
3ARO, Department of Postharvest and Food Sciences, The Volcani Center, 68 HaMccabim Road, Rishon LeZion 7505101, Israel
*Corresponding author. E-mail:,

Horticulture Research 3,
Article number: 47 (2016)
Views: 702

Received: 06 Aug 2016
Revised: 30 Aug 2016
Accepted: 30 Aug 2016
Published online: 05 Oct 2016


The fungal diversity in harvested apples from organic or conventional management practices was analyzed in different fruit locations (stem end, calyx end, peel, and wounded flesh) shortly after fruit purchase (T1) and after 2 weeks of storage (T5). A total of 5,760,162 high-quality fungal sequences were recovered and assigned to 8,504 Operational Taxonomic Units. Members of the phylum Ascomycota were dominant in all samples and accounted for 91.6% of the total number of detected sequences. This was followed by Basidiomycota (8%), Chytridiomycota (0.1%), and unidentified fungi (0.3%). Alpha and beta diversity analyses revealed the presence of significantly different fungal populations in the investigated fruit parts. Among detected fungi, the genus Penicillium prevailed in the peel and in the wounded flesh while Alternaria spp. prevailed in the calyx and stem end samples that included apple core tissues. Several taxonomic units that appear to be closely related to pathogenic fungi associated with secondary human infections were present in peel and wounds. Moreover, significantly different populations were revealed in organic and conventional apples and this result was consistent in all investigated fruit parts (calyx end, peel, stem end, and wounded flesh). Several unique taxa were exclusively detected in organic apples suggesting that management practices may have been a contributing factor in determining the taxa present. In contrast, little differences were revealed in the two assessment times (T1 and T5). Results of the present study represent an advancement of the current knowledge on the fungal microbiota in collected fruit tissues of apple.