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Article|01 Dec 2019|OPEN
Global analysis of lysine succinylation in patchouli plant leaves
Xiaobing Wang1 , Xiuzhen Chen1 , Junren Li1 , Xuanxuan Zhou1 , Yanting Liu1 , Liting Zhong1 , Yun Tang1 , Hai Zheng2 , Jiyun Liu3 , Ruoting Zhan1 and Likai Chen,1 ,
1Research Center of Chinese Herbal Resource Science and Engineering, Guangzhou University of Chinese Medicine; Key Laboratory of Chinese Medicinal Resource from Lingnan (Guangzhou University of Chinese Medicine), Ministry of Education; Joint Laboratory of National Engineering Research Center for the Pharmaceutics of Traditional Chinese Medicines, Guangzhou, Guangdong 510006, P. R. China
2Guangdong Institute of Traditional Chinese Medicine, Guangzhou, Guangdong 510520, P. R. China
3Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian 361005, P.R. China
*Corresponding author. E-mail: chenlk@gzucm.edu.cn

Horticulture Research 6,
Article number: 133 (2019)
doi: https://doi.org/10.1038/s41438-019-0216-5
Views: 1170

Received: 24 Mar 2019
Revised: 25 Sep 2019
Accepted: 23 Oct 2019
Published online: 01 Dec 2019

Abstract

Lysine succinylation is a novel, naturally occurring posttranslational modification (PTM) in living organisms. Global lysine succinylation identification has been performed at the proteomic level in various species; however, the study of lysine succinylation in plant species is relatively limited. Patchouli plant (P. cablin (Blanco) Benth., Lamiaceae) is a globally important industrial plant and medicinal herb. In the present study, lysine succinylome analysis was carried out in patchouli plants to determine the potential regulatory role of lysine succinylation in patchouli growth, development, and physiology. The global succinylation sites and proteins in patchouli plants were screened with an immunoprecipitation affinity enrichment technique and advanced mass spectrometry-based proteomics. Several bioinformatic analyses, such as function classification and enrichment, subcellular location predication, metabolic pathway enrichment and protein−protein interaction networking, were conducted to characterize the functions of the identified sites and proteins. In total, 1097 succinylation sites in 493 proteins were detected in patchouli plants, among which 466 succinylation sites in 241 proteins were repeatedly identified within three independent experiments. The functional characterization of these proteins indicated that the tricarboxylic acid (TCA) cycle, oxidative phosphorylation, photosynthesis processes, and amino acid biosynthesis may be regulated by lysine succinylation. In addition, these succinylated proteins showed a wide subcellular location distribution, although the chloroplast and cytoplasm were the top two preferred cellular components. Our study suggested the important role of lysine succinylation in patchouli plant physiology and biology and could serve as a useful reference for succinylation studies in other medicinal plants.