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Article|21 Dec 2018|OPEN
A NAC transcription factor, NOR-like1, is a new positive regulator of tomato fruit ripening
Ying Gao1 , Wei Wei2 , Xiaodan Zhao3 , Xiaoli Tan2 , Zhongqi Fan2 , Yiping Zhang1 , Yuan Jing1 , Lanhuan Meng1 , Benzhong Zhu1 , Hongliang Zhu1 , Jianye Chen2 , Cai-Zhong Jiang4,5 , Donald Grierson6,7 , Yunbo Luo1 , Da-Qi Fu,1 ,
1Laboratory of Fruit Biology, College of Food Science & Nutritional Engineering, China Agricultural University, 100083 Beijing, China
2College of Horticulture, South China Agricultural University, 510642 Guangzhou, China
3College of Food Science, Beijing Technology and Business University, 100037 Beijing, China
4Department of Plant Sciences, University of California, Davis, CA 95616, USA
5Crops Pathology and Genetics Research Unit, United States Department of Agriculture, Agricultural Research Service, Davis, CA 95616, USA
6Plant Sciences Division, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
7College of Agriculture & Biotechnology, Zhejiang University, 310058 Hangzhou, China
*Corresponding author. E-mail: daqifu@cau.edu.cn

Horticulture Research 5,
Article number: 75 (2018)
doi: https://doi.org/10.1038/s41438-018-0111-5
Views: 1098

Received: 24 Nov 2018
Revised: 10 Dec 2018
Accepted: 11 Dec 2018
Published online: 21 Dec 2018

Abstract

Ripening of the model fruit tomato (Solanum lycopersicum) is controlled by a transcription factor network including NAC (NAM, ATAF1/2, and CUC2) domain proteins such as No-ripening (NOR), SlNAC1, and SlNAC4, but very little is known about the NAC targets or how they regulate ripening. Here, we conducted a systematic search of fruit-expressed NAC genes and showed that silencing NOR-like1 (Solyc07g063420) using virus-induced gene silencing (VIGS) inhibited specific aspects of ripening. Ripening initiation was delayed by 14 days when NOR-like1 function was inactivated by CRISPR/Cas9 and fruits showed obviously reduced ethylene production, retarded softening and chlorophyll loss, and reduced lycopene accumulation. RNA-sequencing profiling and gene promoter analysis suggested that genes involved in ethylene biosynthesis (SlACS2, SlACS4), color formation (SlGgpps2, SlSGR1), and cell wall metabolism (SlPG2a, SlPL, SlCEL2, and SlEXP1) are direct targets of NOR-like1. Electrophoretic mobility shift assays (EMSA), chromatin immunoprecipitation-quantitative PCR (ChIP-qPCR), and dual-luciferase reporter assay (DLR) confirmed that NOR-like1 bound to the promoters of these genes both in vitro and in vivo, and activated their expression. Our findings demonstrate that NOR-like1 is a new positive regulator of tomato fruit ripening, with an important role in the transcriptional regulatory network.